CTAN Comprehensive TeX Archive Network

CTAN up­date: texshade

Date: Oc­to­ber 9, 2009 8:04:04 AM CEST
This should be at your lo­cal mir­ror by this time to­mor­row. Jim Hef{}feron Saint Michael's Col­lege ................................................................................... The fol­low­ing in­for­ma­tion was pro­vided by our fel­low con­trib­u­tor: Name of con­tri­bu­tion: TeXshade Ver­sion num­ber: 1.20 Author's name: Eric Beitz Lo­ca­tion on CTAN: /macros/la­tex/con­trib/texshade/ Sum­mary de­scrip­tion: Up­date of the DNA and pro­tein se­quence align­ment LaTeX pack­age TeXshade Li­cense type: lppl An­nounce­ment text:
This up­date fi­nally cor­rects prob­lems with dis­play­ing se­quence align­ments in land­scape mode. New com­mands were in­tro­duced to se­lect and de­fine residue weight ta­bles (PAM250, PAM100, BLOSUM62, etc.) for cal­cu­la­tions of se­quence con­ser­va­tion. Another set of com­mands al­lows you to print ta­bles with per­cent iden­tity and sim­i­lar­ity data.
This pack­age is lo­cated at http://tug.ctan.org/tex-archive/macros/la­tex/con­trib/texshade/ . More in­for­ma­tion is at http://tug.ctan.org/pkg/texshade (if the pack­age is new it may take a day for that in­for­ma­tion to ap­pear). We are sup­ported by the TeX Users Group http://www.tug.org . Please join a users group; see http://www.tug.org/user­groups.html .

texshade – Pack­age for set­ting nu­cleotide and pep­tide align­ments

shade is align­ment shad­ing soft­ware com­pletely writ­ten in /; it can pro­cess mul­ti­ple se­quence align­ments in the .MSF and the .ALN file for­mats. In ad­di­tion to com­mon shad­ing al­go­rithms, it pro­vides spe­cial shad­ing modes show­ing func­tional as­pects, e.g. charge or hy­dropa­thy, and a wide range of com­mands for han­dling shad­ing colours, text styles, la­bels, leg­ends; it even al­lows the user to de­fine com­pletely new shad­ing modes. shade com­bines high­est flex­i­bil­ity with out­put qual­ity — all in a bun­dle that does not de­mand ex­ces­sive de­vel­op­ment time of the user.

Copy­right1999–2018 Eric Beitz
Main­tainerEric Beitz



Guest Book Sitemap Contact Contact Author