CTAN Comprehensive TeX Archive Network

CTAN update: shade v1.13

Date: February 26, 2006 8:28:33 PM CET
On Thu, 23 Feb 2006, Eric Beitz submitted an update ot the texshade package. Location on CTAN: /macros/latex/contrib/texshade/ Summary description: Update of the DNA and protein sequence alignment LaTeX package TeXshade License type: lppl Announcement text:
This is a major update of the DNA and protein sequence alignment LaTeX package TeXshade. Now, sequence logos can be displayed. Further, a novel way to identify and visualize relevant, subfamily-specific sequence deviations has been implemented, i.e. subfamily logos. Numerous improvements have been made, e.g. limitations in the maximal number of sequences per alignment have been overcome.
Thanks for the upload. For the CTAN Team Rainer Schöpf

texshade – Package for setting nucleotide and peptide alignments

shade is alignment shading software completely written in /; it can process multiple sequence alignments in the .MSF and the .ALN file formats. In addition to common shading algorithms, it provides special shading modes showing functional aspects, e.g. charge or hydropathy, and a wide range of commands for handling shading colours, text styles, labels, legends; it even allows the user to define completely new shading modes. shade combines highest flexibility with output quality — all in a bundle that does not demand excessive development time of the user.

Copyright1999–2024 Eric Beitz
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