CTAN Comprehensive TeX Archive Network

CTAN Update: shade v1.16

Date: February 19, 2007 5:39:36 PM CET
On Mon, 19 Feb 2007, Eric Beitz submitted an update to the texshade package. TeXshade is an alignment shading software completely written in TeX/LaTeX which can process multiple sequence alignments in the .MSF and the .ALN file format. It provides in addition to common shading algorithms special shading modes featuring functional aspects, e.g. charge or hydropathy, and a plenitude of commands for handling shading colours, text styles, labels, legends and even allows the user to define completely new shading modes. TeXshade combines highest flexibility and the habitual TeX output quality-with reasonable time expenditure. Location on CTAN: /macros/latex/contrib/texshade/ Summary description: Update of the DNA and protein sequence alignment LaTeX package TeXshade License type: lppl Announcement text:
This is a new release (v1.16) of TeXshade. It fixes problems with unusual residues names, such as `O' or `X' and introduces new commands for more flexibility with the ruler and for exporting the consensus shading colors as a pymol script for shading 3D protein models. Further, BioTeX, i.e. TeXshade and TeXtopo, have a new home, see README or documentation.
This package is located at http://dante.ctan.org/tex-archive/macros/latex/contrib/texshade/ . More information is at http://tug.ctan.org/info/?id=texshade (if the package is new it may take a day for that information to appear). We are supported by the TeX Users Group http://www.tug.org . Please join a users group; see http://www.tug.org/usergroups.html . _______________________________________________ Thanks for the upload. For the CTAN Team Rainer Schöpf

texshade – Package for setting nucleotide and peptide alignments

shade is alignment shading software completely written in /; it can process multiple sequence alignments in the .MSF and the .ALN file formats. In addition to common shading algorithms, it provides special shading modes showing functional aspects, e.g. charge or hydropathy, and a wide range of commands for handling shading colours, text styles, labels, legends; it even allows the user to define completely new shading modes. shade combines highest flexibility with output quality — all in a bundle that does not demand excessive development time of the user.

Packagetexshade
Version1.25
Copyright1999–2018 Eric Beitz
MaintainerEric Beitz

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