CTAN Comprehensive TeX Archive Network

CTAN Up­date: shade v1.19

Date: March 9, 2009 11:58:15 PM CET
On Mon, 9 Mar 2009 Eric Beitz sub­mit­ted an up­date to the texshade pack­age. TeXshade is an align­ment shad­ing soft­ware com­pletely writ­ten in TeX/LaTeX which can pro­cess mul­ti­ple se­quence align­ments in the .MSF and the .ALN file for­mat. It pro­vides in ad­di­tion to com­mon shad­ing al­go­rithms spe­cial shad­ing modes fea­tur­ing func­tional as­pects, e.g. charge or hy­dropa­thy, and a plen­i­tude of com­mands for han­dling shad­ing colours, text styles, la­bels, leg­ends and even al­lows the user to de­fine com­pletely new shad­ing modes. TeXshade com­bines high­est flex­i­bil­ity and the ha­bit­ual TeX out­put qual­ity?with rea­son­able time ex­pen­di­ture. Lo­ca­tion on CTAN: /macros/la­tex/con­trib/texshade/ Li­cense type: lppl An­nounce­ment text:
This lat­est up­date of TeXshade pro­vides a func­tion that I wanted to im­ple­ment for a long time: one can now dis­play not only a con­tin­u­ous se­quence stretch but se­lect residues in­di­vid­u­ally to elim­i­nate un­in­ter­est­ing po­si­tions. Selec­tion can be ei­ther man­u­ally or based on the 3D co­or­di­nates of a PDB struc­ture file. This way, residues within a given dis­tance to a point, along a line, or above and be­low a plane can be shown or spe­cially la­beled.
This pack­age is lo­cated at http://mir­ror.ctan.org/macros/la­tex/con­trib/texshade/ . More in­for­ma­tion is at http://tug.ctan.org/info/?id=texshade (if the pack­age is new it may take a day for that in­for­ma­tion to ap­pear). We are sup­ported by the TeX Users Group http://www.tug.org . Please join a users group; see http://www.tug.org/user­groups.html . _______________________________________________ Thanks for the up­load. For the CTAN Team Rainer Schöpf

texshade – Pack­age for set­ting nu­cleotide and pep­tide align­ments

shade is align­ment shad­ing soft­ware com­pletely writ­ten in /; it can pro­cess mul­ti­ple se­quence align­ments in the .MSF and the .ALN file for­mats. In ad­di­tion to com­mon shad­ing al­go­rithms, it pro­vides spe­cial shad­ing modes show­ing func­tional as­pects, e.g. charge or hy­dropa­thy, and a wide range of com­mands for han­dling shad­ing colours, text styles, la­bels, leg­ends; it even al­lows the user to de­fine com­pletely new shad­ing modes. shade com­bines high­est flex­i­bil­ity with out­put qual­ity — all in a bun­dle that does not de­mand ex­ces­sive de­vel­op­ment time of the user.

Pack­agetexshade
Ver­sion1.25
Copy­right1999–2018 Eric Beitz
Main­tainerEric Beitz

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