CTAN Comprehensive TeX Archive Network

CTAN Update: shade v1.19

Date: March 9, 2009 11:58:15 PM CET
On Mon, 9 Mar 2009 Eric Beitz submitted an update to the texshade package. TeXshade is an alignment shading software completely written in TeX/LaTeX which can process multiple sequence alignments in the .MSF and the .ALN file format. It provides in addition to common shading algorithms special shading modes featuring functional aspects, e.g. charge or hydropathy, and a plenitude of commands for handling shading colours, text styles, labels, legends and even allows the user to define completely new shading modes. TeXshade combines highest flexibility and the habitual TeX output quality—with reasonable time expenditure. Location on CTAN: /macros/latex/contrib/texshade/ License type: lppl Announcement text:
This latest update of TeXshade provides a function that I wanted to implement for a long time: one can now display not only a continuous sequence stretch but select residues individually to eliminate uninteresting positions. Selection can be either manually or based on the 3D coordinates of a PDB structure file. This way, residues within a given distance to a point, along a line, or above and below a plane can be shown or specially labeled.
This package is located at http://mirror.ctan.org/macros/latex/contrib/texshade/ . More information is at http://tug.ctan.org/info/?id=texshade (if the package is new it may take a day for that information to appear). We are supported by the TeX Users Group http://www.tug.org . Please join a users group; see http://www.tug.org/usergroups.html . _______________________________________________ Thanks for the upload. For the CTAN Team Rainer Schöpf

texshade – Package for setting nucleotide and peptide alignments

shade is alignment shading software completely written in /; it can process multiple sequence alignments in the .MSF and the .ALN file formats. In addition to common shading algorithms, it provides special shading modes showing functional aspects, e.g. charge or hydropathy, and a wide range of commands for handling shading colours, text styles, labels, legends; it even allows the user to define completely new shading modes. shade combines highest flexibility with output quality — all in a bundle that does not demand excessive development time of the user.

Packagetexshade
Version1.25
Copyright1999–2018 Eric Beitz
MaintainerEric Beitz

Announcements

more

Guest Book Sitemap Contact Contact Author